About this blog
BASHing data is a companion blog to A Data Cleaner's Cookbook. It continues a series of data-related posts I contributed from 2014 to 2018 to Andrew Powell's Linux Rain blog.
This is a place for demonstrations and trials of command-line data "ops". The operations might include analysing, archiving, auditing, cleaning, de-duplicating, encoding, entering, migrating, querying, reformatting, reporting, storing etc.
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About me
I'm a data auditor and retired zoologist.
Robert Mesibov, West Ulverstone, Tasmania, Australia
robert.mesibov@gmail.com
The blog posts on this website are licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
Most recent post:
Embedded newlines without a clue (2019-11-15)
Without clear markers for field fragments, you need to be creative
Posts by category (most recent post first):
Data auditing, cleaning and processing
Topping and tailing, and the slowness of GNU sort (2019-11-08)
GNU sort can be a rate-limiting step in a pipeline
How to guess the field separator in a table (2019-10-04)
Count up the likely field separators in the header line with AWK
Long, narrow tables vs short, wide ones (2019-08-16)
Three tests of processing speed show that table shape doesn't matter
A bulk replacement GUI with YAD (2019-08-02)
A shell script for "normalising" pseudo-duplicates in a data table
Finding malformed markup (2019-07-19)
How to identify messed-up HTML tags in non-HTML documents
Leading and trailing whitespace (2019-06-28)
How to find and delete "fore and aft" whitespace within fields in a data table
Growing the Cookbook's "broken" function (2019-05-31)
A more informative way to tally up the number of fields in a data table
How to delete, insert and replace whole lines (2019-05-12)
Use line addresses to target just the right lines
How to delete, insert and replace whole fields (2019-05-05)
Cut and paste are usually the right tools for these jobs
Comparing fields across two tables (2019-02-03; updated)
A script to check for changes in a field
How many fruits in 5 apples, 3 oranges, 1 pear and 17 lemons? (2018-12-16)
On the command line, you can ignore everything but the numbers
Finding changepoints in a list, revisited (2018-12-06)
Using AWK to find where values change in a list
How to find distances between lat/lons for geochecking (2018-11-07)
When you're looking for big differences, an approximate method is fine
Bird watching with AWK and grep (2018-10-24)
Showing off the fastest way to search a text file for strings in another file
How to validate ISO 8601 dates without regex (2018-10-05)
Check for format and content errors in YYYY-MM-DD fields with AWK
Fightin' fields (2018-09-30)
Finding disagreements between data fields can be challenging
Fuzzy matching in practice (2018-09-23)
Tips for approximate matching with tre-agrep
48 sea levels and a trope for your terminal (2018-08-11)
A bulk string replacement with AWK, and that ACCESS DENIED thing
Pseudo-blank ("empty") records and fields (2018-08-04)
How to find not-quite-empty rows and columns in a data table
Time series ops (2018-07-23)
Using AWK to summarise time series data
Partial duplicates (2018-07-14)
One way to find "pseudoduplicated" records
Truncated data items (2018-07-04)
Detecting truncations, such as a 100-character string clipped to 50 characters in a database
Compare parts of strings (2018-05-22)
How to use AWK's "split" function to compare parts of strings
Characters and encoding
Introducing the replo (2019-11-01)
Character replacements by computers can be reversible, reconstructable or researchable
An unexpected character replacement (2019-10-18)
Strange replacements of non-ASCII characters by R
Return of the mojibake detective (2019-07-05)
Three new cases of mysterious character corruptions
Quotes as characters (2019-04-07; updated 2019-05-26)
How to recognise the nine different kinds of single and double quotes
How to choose special characters, revisited (2019-03-24)
Scripting a little GUI for copying/pasting your most often-used special characters
iconv and illegal input sequences (2018-09-13)
Getting around a roadblock in changing the character encoding of a file
SCI and 62;c62;c62;c... (2018-08-25)
A control character causes strange behaviour in GUI terminals
Mojibake detective work (2018-08-06)
A close look at some character encoding problems
Question marks that aren't really question marks (2018-07-27)
Some question marks are signs that a program doesn't understand a character's encoding
Combo characters (2018-06-09)
How to deal with Unicode's combining characters
Data formatting
Embedded newlines without a clue (2019-11-15)
Without clear markers for field fragments, you need to be creative
Add leading zeroes that aren't really leading (2019-09-13)
How to format numbers when they're inside non-numeric strings
A GUI to re-order fields in a table (2019-08-30)
A shell script for building a new table with reordered fields
The lat/lon floating point delusion (2019-08-09)
That big building is at -33.8903169365705 151.198409720645? Really?
Renumber a list after inserting a line — updated (2019-07-27)
A handy function for inserting and renumbering
Data from dingbats: copying down (2019-02-24)
Copying down is easy in a spreadsheet, but it's also possible on the command line
Fancy numbering of records (2019-02-17)
On the command line, you can number a list of records any way you like
Reformatting a list, cleverly (2019-01-27)
Create horizontal lists from a vertical one
Horizontal sorting within a field (2019-01-13)
There are two different ways to sort a field "horizontally", but neither of them is simple.
Changing the month format: a fairly general solution (2018-12-30)
Build a look-up table and use the starting and finishing format in an AWK command
Putting information into a table from the table's filename (2018-12-13)
The example adds a date from the filename to each record in the table
Unwrap your fasta (2018-12-01)
How to concatenate the sequence lines in FASTA files
Repair job: separate the tandem repeats (2018-10-26)
How to split a tandem repeat between fields
Too many lat/lon digits (2018-06-30)
Rounding off latitude/longitude data to an appropriate number of significant figures
Embedded newlines (2018-06-23)
How to safely remove embedded newlines
Data analysis examples
Steady as she goes, in Darwin (2019-10-25)
The daily temperatures in Darwin (Australia) are remarkably constant
Two ugly CSVs (2019-04-28)
Open but messy data from the Australian Electoral Commission and Companies House (UK)
Dog and cat data (2019-03-31)
A command-line exploration of five public datasets
Data with bulges (2019-03-10)
Three cases of unexpectedly large values in a data item
Two special data validations (2019-03-03)
Is that tree correctly located? Is that list of names and addresses truly regular?
Drugs on the command line (2019-01-06)
A disappointing dive into drugs data from the US Food and Drug Administration
Has the rainfall pattern in my hometown changed? (2018-12-23)
No obvious trends in number, length or intensity of rainfall events in recent years
Fun with BOM data (2018-07-11)
Weather watching with wget and gnuplot
Pivoting airlines (2018-06-03)
Using arrays of arrays to build a pivot table with AWK
AWK tips and tricks
A muggle's guide to AWK arrays: 4 (2019-09-20)
Easier and more flexible ways to sort array outputs
A muggle's guide to AWK arrays: 3 (2019-08-23)
Reformatting and table joining using arrays
A muggle's guide to AWK arrays: 2 (2019-07-12)
Working with two files, or the same file twice
A muggle's guide to AWK arrays: 1 (2019-06-07)
Array naming, index strings and value strings
A surprising AWK trick (2018-05-27)
A clever way to avoid using a flag in AWK
BASH tips and tricks
Working around the BASH brace expansion rule (2019-06-14)
How to build Cartesian string products in BASH
The magic of BASH string expansion (2019-05-19)
A simple trick that allows AWK and sed to use BASH as an interpreter
Avoiding senior moments with command-line functions (2018-11-13)
The trick is to make the documentation available on the CLI
Useful programs for command-line data ops
VisiData: a table explorer for the terminal (2019-10-11)
Display, sort, reformat and more with this CLI utility
Transpose, pivot and bin with GNU Datamash 1.4 (2019-05-24)
Do complex data transformations more easily with Datamash
Parsing scientific names (gnparser) (2019-01-20)
Scientific names are much harder to parse than personal names
Data entry and display
Plotting data in the terminal with gnuplot (2019-06-21)
A separate graphic is much better than an in-terminal plot
Making pictures with data (2019-04-14)
How to display data bytes as image bytes
Mapping with gnuplot (2018-10-31)
How to use gnuplot to put data points on a basemap
How to enter nothing in a database (2018-10-18)
If you have nothing to say, say nothing
Displaying data from table fragments (2018-09-06)
One way to build a tidy table from a jumble of data
A record pager built with YAD (2018-08-18; updated 2018-09-09)
How to turn a YAD dialog into a GUI viewer/pager for records in a data table
GUI ways to view and edit big text files (2018-07-31)
glogg, gvim, Geany and csvpad, but not spreadsheets
YAD repeat and edit (2018-05-21)
How to avoid re-entering data in a YAD data entry form
The Windows and spreadsheet worlds
Spreadsheet annoyance no. 2 (2019-04-21)
Spreadsheets make dates out of entries that aren't dates, but that's not all they mess up
The trouble with Windows CRLF (2019-03-17)
Windows line endings are in a pain in the ... terminal
Getting data out of Excel safely (2019-02-10)
Watch out for embedded linebreaks, comma problems and character encoding issues
Curse of the CSV monster (2018-07-18)
CSV with broken records to TSV
Miscellaneous stuff
A command-line "Countdown" (UK) companion (2019-09-27)
Fast solver for anagram puzzles, and a puzzle generator
Getting data from an Enphase Envoy S (2019-09-06)
Two user-accessible JSON files with performance data
Data on clay (2018-09-20)
Cheap data storage for thousands of years? Check. Ancient glyphs in your terminal? Check.