About this blog
BASHing data is a companion blog to A Data Cleaner's Cookbook. It continues a series of data-related posts I contributed from 2014 to 2018 to Andrew Powell's Linux Rain blog.
This is a place for demonstrations and trials of command-line data "ops". The operations might include analysing, archiving, auditing, cleaning, de-duplicating, encoding, entering, migrating, querying, reformatting, reporting, storing etc.
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About me
I'm a part-time data auditor and incompletely retired zoologist.
Robert Mesibov, West Ulverstone, Tasmania, Australia
robert.mesibov@gmail.com
List of posts:
Getting data out of Excel safely (2019-02-10)
Watch out for embedded linebreaks, comma problems and character encoding issues
Comparing fields across two tables (2019-02-03; updated)
A script to check for changes in a field
Reformatting a list, cleverly (2019-01-27)
Create horizontal lists from a vertical one
Parsing scientific names (2019-01-20)
Scientific names are much harder to parse than personal names
Horizontal sorting within a field (2019-01-13)
There are two different ways to sort a field "horizontally", but neither of them is simple.
Drugs on the command line (2019-01-06)
A disappointing dive into drugs data from the US Food and Drug Administration
Changing the month format: a fairly general solution (2018-12-30)
Build a look-up table and use the starting and finishing format in an AWK command
Has the rainfall pattern in my hometown changed? (2018-12-23)
No obvious trends in number, length or intensity of rainfall events in recent years
How many fruits in 5 apples, 3 oranges, 1 pear and 17 lemons? (2018-12-16)
On the command line, you can ignore everything but the numbers
Putting information into a table from the table's filename (2018-12-13)
The example adds a date from the filename to each record in the table
Finding changepoints in a list, revisited (2018-12-06)
Using AWK to find where values change in a list
Unwrap your fasta (2018-12-01)
How to concatenate the sequence lines in FASTA files
Avoiding senior moments with command-line functions (2018-11-13)
The trick is to make the documentation available on the CLI
How to find distances between lat/lons for geochecking (2018-11-07)
When you're looking for big differences, an approximate method is fine
Mapping with gnuplot (2018-10-31)
How to use gnuplot to put data points on a basemap
Repair job: separate the tandem repeats (2018-10-26)
How to split a tandem repeat between fields
Bird watching with AWK and grep (2018-10-24)
Showing off the fastest way to search a text file for strings in another file
How to enter nothing in a database (2018-10-18)
If you have nothing to say, say nothing
How to validate ISO 8601 dates without regex (2018-10-05)
Check for format and content errors in YYYY-MM-DD fields with AWK
Fightin' fields (2018-09-30)
Finding disagreements between data fields can be challenging
Fuzzy matching in practice (2018-09-23)
Tips for approximate matching with tre-agrep
Data on clay (2018-09-20)
Cheap data storage for thousands of years? Check. Ancient glyphs in your terminal? Check.
iconv and illegal input sequences (2018-09-13)
Getting around a roadblock in changing the character encoding of a file
Displaying data from table fragments (2018-09-06)
One way to build a tidy table from a jumble of data
SCI and 62;c62;c62;c... (2018-08-25)
A control character causes strange behaviour in GUI terminals
A record pager built with YAD (2018-08-18; updated 2018-09-09)
How to turn a YAD dialog into a GUI viewer/pager for records in a data table
48 sea levels and a trope for your terminal (2018-08-11)
A bulk string replacement with AWK, and that ACCESS DENIED thing
Mojibake detective work (2018-08-06)
A close look at some character encoding problems
Pseudo-blank ("empty") records and fields (2018-08-04)
How to find not-quite-empty rows and columns in a data table
GUI ways to view and edit big text files (2018-07-31)
glogg, gvim, Geany and csvpad, but not spreadsheets
Question marks that aren't really question marks (2018-07-27)
Some question marks are signs that a program doesn't understand a character's encoding
Time series ops (2018-07-23)
Using AWK to summarise time series data
Curse of the CSV monster (2018-07-18)
CSV with broken records to TSV
Partial duplicates (2018-07-14)
One way to find "pseudoduplicated" records
Fun with BOM data (2018-07-11)
Weather watching with wget and gnuplot
Truncated data items (2018-07-04)
Detecting truncations, such as a 100-character string clipped to 50 characters in a database
Too many lat/lon digits (2018-06-30)
Rounding off latitude/longitude data to an appropriate number of significant figures
Embedded newlines (2018-06-23)
How to safely remove embedded newlines
Combo characters (2018-06-09)
How to deal with Unicode's combining characters
Pivoting airlines (2018-06-03)
Using arrays of arrays to build a pivot table with AWK
A surprising AWK trick (2018-05-27)
A clever way to avoid using a flag in AWK
Compare parts of strings (2018-05-22)
How to use AWK's "split" function to compare parts of strings
YAD repeat and edit (2018-05-21)
How to avoid re-entering data in a YAD data entry form